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Editor-in-Chief: Marco Ventura
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Microbiome Research Reports
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Editor-in-Chief: Marco Ventura
Indexing: ESCI, Scopus, PMC, CAS, Lens,
Submission to first decision: 60 days
Home Articles Special Issues Volumes Webinars Videos

Microbiome Research Reports

In vitro human gut microbiota fermentation models: opportunities, challenges, and pitfalls

Mode of action of Akkermansia muciniphila in the intestinal dialogue: role of extracellular proteins, metabolites and cell envelope components

Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium

MEGAnnotator2: a pipeline for the assembly and annotation of microbial genomes

Folate-producing bifidobacteria: metabolism, genetics, and relevance

Articles

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Probiotic membrane vesicles: emerging tools for disease treatment

Abstract:
Probiotics are widely recognized for their health benefits, particularly in disease prevention and treatment. Recent research suggests that their therapeutic... MORE
Jari Verbunt, ...Frank R. M. Stassen,
Open Access Review DOI: 10.20517/mrr.2025.20 24 Jun 2025
Views: 95 Downloads: 24
Download PDF 0 0

Perinatal factors influencing the earliest establishment of the infant microbiome

Abstract:
Background: While extensive research exists on the human microbiome, a number of outstanding questions remain regarding the infant microbiome in the... MORE
Kevin LinehanKevin Linehan, ... Eugene M. DempseyEugene M. Dempsey
Open Access Original Article DOI: 10.20517/mrr.2024.92 11 Jun 2025
Views: 162 Downloads: 113
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Assessment of absolute abundance in mother-infant gut microbiome using marine-sourced bacterial DNA spike-in and comparison with conventional quantification methods

Abstract:
Aim: To evaluate the effectiveness of marine-sourced bacterial DNA spike-in quantification for determining absolute microbial abundance in the gut... MORE
Shuo Wang, ... R. Paul RossR. Paul Ross
Open Access Original Article DOI: 10.20517/mrr.2024.94 8 Jun 2025
Views: 318 Downloads: 114
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Understanding the interaction between melatonin and bifidobacteria

Abstract:
Aim: The human gastrointestinal tract is home to a complex and dynamic microbial community, known as the gut microbiota, which begins to form at birth... MORE
Sonia Mirjam Rizzo, ...Francesca Turroni,
Open Access Original Article DOI: 10.20517/mrr.2025.10 15 May 2025
Views: 210 Downloads: 28
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Ex vivo study on prebiotic & choline combination to modulate gut bacteria, enhance choline bioavailability, and reduce TMA production

Abstract:
Aim: Choline is a universal methyl group donor, playing an essential role in DNA methylation, signaling pathways, and the transport and metabolism of... MORE
Ying Qi Goh, ... Yulan WangYulan Wang
Open Access Original Article DOI: 10.20517/mrr.2024.90 6 May 2025
Views: 532 Downloads: 206
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In vitro human gut microbiota fermentation models: opportunities, challenges, and pitfalls

Abstract:
The human gut microbiota (HGM) plays a pivotal role in health and disease. Consequently, nutritional and medical research focusing on HGM modulation strategies... MORE
Julia Isenring, ... Christophe Lacroix
Open Access Review DOI: 10.20517/mrr.2022.15 16 Jan 2023
Views: 3507 Downloads: 1843
Download PDF 0 21

Mode of action of Akkermansia muciniphila in the intestinal dialogue: role of extracellular proteins, metabolites and cell envelope components

Abstract:
Akkermansia muciniphila is a promising next-generation beneficial microbe due to its natural presence in the mucus layer of the gut, its symbiotic... MORE
Anneleen Segers, Willem M. de VosWillem M. de Vos
Open Access Review DOI: 10.20517/mrr.2023.05 12 Mar 2023
Views: 4397 Downloads: 1949
Download PDF 0 12

Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium

Abstract:
The human gut is home to trillions of microorganisms that influence several aspects of our health. This dense microbial community targets almost all dietary... MORE
Alberto J.M. Martin, ... Daniel Garrido
Open Access Review DOI: 10.20517/mrr.2023.10 9 May 2023
Views: 1916 Downloads: 993
Download PDF 0 5
Marco Ventura
Douwe van Sinderen
Emma Allen-Vercoe
Miguel Gueimonde
Sin-Hyeog Im
Catherine Stanton
Francesca Turroni
Liping Zhao
Giovanni Barbara
Rodolphe Barrangou
Patrizia Brigidi
Aidan G. Coffey
Maria Carmen Collado
Clara G. de los Reyes-Gavilán
Antonio Gasbarrini
Dirk Haller
Susan Anne Joyce
Sung Woo Kim
Christophe Lacroix
Sarah Lebeer
Gabriele Andrea Lugli
Leonardo Mancabelli
Abelardo Margolles
Christian Milani
Daniele Del Rio
R. Paul Ross
Karen Scott
Erwin Gerard Zoetendal
Eric Altermann
Clara Belzer
Francesca Bottacini
Lucio Capurso
Gong Cheng
Shinya Fushinobu
Takane Katayama
Jennifer Mahony
Pedro Mena
Jose Munoz-Munoz
Ravinder Nagpal
Lorena Ruiz
Bo Yang
Ju-Sheng Zheng
Silvia Arboleya
Massimiliano Bianchi
Yangchun Cao
Ryan Chanyi
Tingtao Chen
Francesco Comandatore
Daniel Garrido
Riadh Hammami
Giulia Longhi
Amira Metwaly
Fatima Pereira
Sudarshan Shetty
Chenhong Zhang
Xu Zhang
1 / 10
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Themed Collections
bifidobacteria
gut microbiota
microbiome
probiotics
bacteriophage
phages
antibiotics
microbial
infant gut
microbial ecology
intestinal microbiome
host-microbe interactions
intestinal fungi
microbial ecosystems
metagenomics
microbial DNA sequencing
bifidobacterium
genomic
irritable bowel syndrome
Topic: Akkermansia muciniphila and Its Health Benefits: From Associations to Causality
Topic: Exploring the Infant Microbiome: From Birth to Early Growth and Development
Topic: Microbiomes of Arthropods and Their Environments
Volume 4, Issue 2 (in progress)
Volume 4, Issue 1
Volume 3, Issue 4
Volume 3, Issue 3
Volume 3, Issue 2
Volume 3, Issue 1
Volume 2, Issue 4
Volume 2, Issue 3
Volume 2, Issue 2
Volume 2, Issue 1
Volume 1, Issue 4
Volume 1, Issue 3
Volume 1, Issue 2
Volume 1, Issue 1
Articles Collection
Special Issue: Akkermansia muciniphila and Its Health Benefits: From Associations to Causality
A Special Interview with Prof. Gregor Reid - Fellow of the Royal Society of Canada and 2024 Highly Cited Researcher
On January 25, 2025, the Editorial Office of Microbiome Research Reports (MRR) was delighted to have a special interview with Prof. Gregor Reid, a Distinguished Professor Emeritus at Western University, Fellow of the Royal Society of Ca
Microbiome Research Reports Receives Its First Impact Factor of 3.8
We are delighted to announce that Microbiome Research Reports (MRR) has received its first official Impact Factor of 3.8, as published in the 2025 edition of Clarivate's Journal Citation Reports (JCR) on June 18.
Microbiome Research Reports Launches the 2nd Recruitment for Early Career Editorial Board Members
We cordially invite outstanding early-career experts and scholars in microbiome research to join us in advancing academic excellence.
Microbiome Research Reports Announces 2024 Best Paper Award – Honoring Excellence in Microbiome Research
The Editorial Office of Microbiome Research Reports (MRR) is pleased to announce that the 2024 Best Paper Award has been granted to the seminal review article "In vitro human gut microbiota fermentation models: opportunities, challenges, and pitfalls" by Prof. Christophe Lacroix et al.
Special Webinar: Brain-Gut-Microbiota Axis: Implications for Psychiatry
On March 24, 2025, Microbiome Research Reports successfully held the webinar on "Brain-Gut-Microbiota Axis: Implications for Psychiatry" presented by Prof. Ted Dinan.
A Special Interview with Prof. Gregor Reid - Fellow of the Royal Society of Canada and 2024 Highly Cited Researcher
On January 25, 2025, the Editorial Office of Microbiome Research Reports (MRR) was delighted to have a special interview with Prof. Gregor Reid, a Distinguished Professor Emeritus at Western University, Fellow of the Royal Society of Ca
Microbiome Research Reports Receives Its First Impact Factor of 3.8
We are delighted to announce that Microbiome Research Reports (MRR) has received its first official Impact Factor of 3.8, as published in the 2025 edition of Clarivate's Journal Citation Reports (JCR) on June 18.

In vitro human gut microbiota fermentation models: opportunities, challenges, and pitfalls

Mode of action of Akkermansia muciniphila in the intestinal dialogue: role of extracellular proteins, metabolites and cell envelope components

Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium

MEGAnnotator2: a pipeline for the assembly and annotation of microbial genomes

Folate-producing bifidobacteria: metabolism, genetics, and relevance

In vitro human gut microbiota fermentation models: opportunities, challenges, and pitfalls
Julia Isenring, ... Christophe Lacroix
Open Access | Review | 16 Jan 2023
Views: 3507 | Downloads: 1843
Download PDF 0 21
Mode of action of Akkermansia muciniphila in the intestinal dialogue: role of extracellular proteins, metabolites and cell envelope components
Anneleen Segers, Willem M. de VosWillem M. de Vos
Open Access | Review | 12 Mar 2023
Views: 4397 | Downloads: 1949
Download PDF 0 12
Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium
Alberto J.M. Martin, ... Daniel Garrido
Open Access | Review | 9 May 2023
Views: 1916 | Downloads: 993
Download PDF 0 5
Marco Ventura
Douwe van Sinderen
Emma Allen-Vercoe
Miguel Gueimonde
Sin-Hyeog Im
Catherine Stanton
Francesca Turroni
Liping Zhao
Giovanni Barbara
Rodolphe Barrangou
Patrizia Brigidi
Aidan G. Coffey
Maria Carmen Collado
Clara G. de los Reyes-Gavilán
Antonio Gasbarrini
Dirk Haller
Susan Anne Joyce
Sung Woo Kim
Christophe Lacroix
Sarah Lebeer
Gabriele Andrea Lugli
Leonardo Mancabelli
Abelardo Margolles
Christian Milani
Daniele Del Rio
R. Paul Ross
Karen Scott
Erwin Gerard Zoetendal
Eric Altermann
Clara Belzer
Francesca Bottacini
Lucio Capurso
Gong Cheng
Shinya Fushinobu
Takane Katayama
Jennifer Mahony
Pedro Mena
Jose Munoz-Munoz
Ravinder Nagpal
Lorena Ruiz
Bo Yang
Ju-Sheng Zheng
Silvia Arboleya
Massimiliano Bianchi
Yangchun Cao
Ryan Chanyi
Tingtao Chen
Francesco Comandatore
Daniel Garrido
Riadh Hammami
Giulia Longhi
Amira Metwaly
Fatima Pereira
Sudarshan Shetty
Chenhong Zhang
Xu Zhang
1 / 10
Volume 4, Issue 2 (in progress)
Volume 4, Issue 1
Volume 3, Issue 4
Volume 3, Issue 3
Volume 3, Issue 2
Volume 3, Issue 1
Volume 2, Issue 4
Volume 2, Issue 3
Volume 2, Issue 2
Volume 2, Issue 1
Volume 1, Issue 4
Volume 1, Issue 3
Volume 1, Issue 2
Volume 1, Issue 1
Articles Collection
Microbiome Research Reports
ISSN 2771-5965 (Online)
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