REFERENCES
1. Gallo RL. Human skin is the largest epithelial surface for interaction with microbes. J Invest Dermatol 2017;137:1213-4.
2. Uberoi A, Bartow-McKenney C, Zheng Q, et al. Commensal microbiota regulates skin barrier function and repair via signaling through the aryl hydrocarbon receptor. Cell Host Microbe 2021;29:1235-48.e8.
3. Leech JM, Dhariwala MO, Lowe MM, et al. Toxin-triggered interleukin-1 receptor signaling enables early-life discrimination of pathogenic versus commensal skin bacteria. Cell Host Microbe 2019;26:795-809.e5.
4. Nakamizo S, Egawa G, Honda T, Nakajima S, Belkaid Y, Kabashima K. Commensal bacteria and cutaneous immunity. Semin Immunopathol 2015;37:73-80.
5. Ahannach S, Delanghe L, Spacova I, et al. Microbial enrichment and storage for metagenomics of vaginal, skin, and saliva samples. iScience 2021;24:103306.
6. Grogan MD, Bartow-McKenney C, Flowers L, Knight SAB, Uberoi A, Grice EA. Research techniques made simple: profiling the skin microbiota. J Invest Dermatol 2019;139:747-52.e1.
8. Perez Perez GI, Gao Z, Jourdain R, et al. Body site is a more determinant factor than human population diversity in the healthy skin microbiome. PLoS One 2016;11:e0151990.
9. Grice EA, Kong HH, Conlan S, et al; NISC Comparative Sequencing Program. Topographical and temporal diversity of the human skin microbiome. Science 2009;324:1190-2.
10. Blekhman R, Goodrich JK, Huang K, et al. Host genetic variation impacts microbiome composition across human body sites. Genome Biol 2015;16:191.
11. Skowron K, Bauza-Kaszewska J, Kraszewska Z, et al. Human skin microbiome: impact of intrinsic and extrinsic factors on skin microbiota. Microorganisms 2021;9:543.
12. Capone KA, Dowd SE, Stamatas GN, Nikolovski J. Diversity of the human skin microbiome early in life. J Invest Dermatol 2011;131:2026-32.
13. Schneider AM, Nolan ZT, Banerjee K, et al. Evolution of the facial skin microbiome during puberty in normal and acne skin. J Eur Acad Dermatol Venereol 2023;37:166-75.
14. Bjerre RD, Bandier J, Skov L, Engstrand L, Johansen JD. The role of the skin microbiome in atopic dermatitis: a systematic review. Br J Dermatol 2017;177:1272-8.
15. Kimmel GW, Lebwohl M. Psoriasis: overview and diagnosis. In: Bhutani T, Liao W, Nakamura M, editors. Evidence-based psoriasis: updates in clinical dermatology. Springer, Cham; 2018. pp. 1-16.
16. Oh J, Byrd AL, Deming C, et al; NISC Comparative Sequencing Program. Biogeography and individuality shape function in the human skin metagenome. Nature 2014;514:59-64.
17. Oh J, Byrd AL, Park M, Kong HH, Segre JA; NISC Comparative Sequencing Program. Temporal stability of the human skin microbiome. Cell 2016;165:854-66.
18. Oh J, Conlan S, Polley EC, Segre JA, Kong HH. Shifts in human skin and nares microbiota of healthy children and adults. Genome Med 2012;4:77.
19. Delanghe L, Spacova I, Van Malderen J, Oerlemans E, Claes I, Lebeer S. The role of lactobacilli in inhibiting skin pathogens. Biochem Soc Trans 2021;49:617-27.
20. Murdaca G, Gerosa A, Paladin F, Petrocchi L, Banchero S, Gangemi S. Vitamin D and microbiota: is there a link with allergies? Int J Mol Sci 2021;22:4288.
21. Possemiers S, Marzorati M, Verstraete W, Van de Wiele T. Bacteria and chocolate: a successful combination for probiotic delivery. Int J Food Microbiol 2010;141:97-103.
22. Tibshirani R, Walther G. Cluster validation by prediction strength. J Comput Graph Stat 2005;14:511-28.
23. Law CW, Chen Y, Shi W, Smyth GK. voom: Precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol 2014;15:R29.
24. Mallick H, Rahnavard A, McIver LJ, et al. Multivariable association discovery in population-scale meta-omics studies. PLoS Comput Biol 2021;17:e1009442.
25. Oksanen J, Simpson GL, Blanchet FG, et al. vegan: Community Ecology Package. Available from: https://cran.r-project.org/package=vegan. [Last accessed on 29 Aug 2024].
26. Song SJ, Lauber C, Costello EK, et al. Cohabiting family members share microbiota with one another and with their dogs. Elife 2013;2:e00458.
27. Rizwan M, Rodriguez-Blanco I, Harbottle A, Birch-Machin MA, Watson REB, Rhodes LE. Tomato paste rich in lycopene protects against cutaneous photodamage in humans in vivo: a randomized controlled trial. Br J Dermatol 2011;164:154-62.
28. Dekio I, Sakamoto M, Hayashi H, Amagai M, Suematsu M, Benno Y. Characterization of skin microbiota in patients with atopic dermatitis and in normal subjects using 16S rRNA gene-based comprehensive analysis. J Med Microbiol 2007;56:1675-83.
29. Zheng Y, Wang Q, Ma L, et al. Alterations in the skin microbiome are associated with disease severity and treatment in the perioral zone of the skin of infants with atopic dermatitis. Eur J Clin Microbiol Infect Dis 2019;38:1677-85.
30. Sun Z, Huang S, Zhu P, et al. A microbiome-based index for assessing skin health and treatment effects for atopic dermatitis in children. mSystems 2019;4:e00293-19.
31. Banerjee S, Schlaeppi K, van der Heijden MGA. Keystone taxa as drivers of microbiome structure and functioning. Nat Rev Microbiol 2018;16:567-76.
32. Lebeer S, Oerlemans EFM, Claes I, et al. Selective targeting of skin pathobionts and inflammation with topically applied lactobacilli. Cell Rep Med 2022;3:100521.
33. Dominguez-Bello MG, Costello EK, Contreras M, et al. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci U S A 2010;107:11971-5.
34. Chu DM, Ma J, Prince AL, Antony KM, Seferovic MD, Aagaard KM. Maturation of the infant microbiome community structure and function across multiple body sites and in relation to mode of delivery. Nat Med 2017;23:314-26.
35. Lebeer S, Ahannach S, Gehrmann T, et al. A citizen-science-enabled catalogue of the vaginal microbiome and associated factors. Nat Microbiol 2022;8:2183-95.
36. Serrano MG, Parikh HI, Brooks JP, et al. Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy. Nat Med 2019;25:1001-11.
37. Qian W, Jia Y, Ren SX, et al. Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. Genome Res 2005;15:757-67.
38. Murphy B, Grimshaw S, Hoptroff M, et al. Alteration of barrier properties, stratum corneum ceramides and microbiome composition in response to lotion application on cosmetic dry skin. Sci Rep 2022;12:5223.
39. Dimitriu PA, Iker B, Malik K, Leung H, Mohn WW, Hillebrand GG. New insights into the intrinsic and extrinsic factors that shape the human skin microbiome. MBio 2019;10:e00839-19.
40. Kennedy EA, Connolly J, Hourihane JO, et al. Skin microbiome before development of atopic dermatitis: Early colonization with commensal staphylococci at 2 months is associated with a lower risk of atopic dermatitis at 1 year. J Allergy Clin Immunol 2017;139:166-72.
41. Shibagaki N, Suda W, Clavaud C, et al. Aging-related changes in the diversity of women’s skin microbiomes associated with oral bacteria. Sci Rep 2017;7:10567.
42. Huang S, Haiminen N, Carrieri AP, et al. Human skin, oral, and gut microbiomes predict chronological age. mSystems 2020;5:e00630-19.
43. Jörissen J, van den Broek MFL, De Boeck I, et al. Case-control microbiome study of chronic otitis media with effusion in children points at streptococcus salivarius as a pathobiont-inhibiting species. mSystems 2021;6:e00056-21.
44. Hullegie S, Venekamp RP, van Dongen TMA, et al. Prevalence and antimicrobial resistance of bacteria in children with acute otitis media and ear discharge: a systematic review. Pediatr Infect Dis J 2021;40:756-62.
45. van den Broek MFL, De Boeck I, Kiekens F, Boudewijns A, Vanderveken OM, Lebeer S. Translating recent microbiome insights in otitis media into probiotic strategies. Clin Microbiol Rev 2019;32:e00010-18.
46. Swaney MH, Nelsen A, Sandstrom S, Kalan LR. Sweat and sebum preferences of the human skin microbiota. Microbiol Spectr 2023;11:e0418022.
47. Zhou X, Shen X, Johnson JS, et al. Longitudinal profiling of the microbiome at four body sites reveals core stability and individualized dynamics during health and disease. Cell Host Microbe 2024;32:506-26.e9.
