fig7

Comparison of k-mer-based <i>de novo</i> comparative metagenomic tools and approaches

Figure 7. Impact of low abundance k-mer filter on the estimation of k-mer-based Bray-Curtis distances. (A) Absolute differences between the exact k-mer Bray-Curtis distances and distances after low abundance k-mer filter; (B) Spearman correlation between the expected taxonomic Bray-Curtis index and the k-mer-based Bray-Curtis index when increasing the low abundance k-mer filter; (C) Absolute differences between the exact k-mer presence/absence Jaccard distances and distances after low abundance k-mer filter; (D) Spearman correlation between the expected taxonomic presence/absence Jaccard index and the k-mer-based Jaccard index when increasing the low abundance k-mer filter.

Microbiome Research Reports
ISSN 2771-5965 (Online)

Portico

All published articles are preserved here permanently:

https://www.portico.org/publishers/oae/

Portico

All published articles are preserved here permanently:

https://www.portico.org/publishers/oae/