fig3

Figure 3. Variation of the gut microbiome between Bifidobacterium-based partitions. (A) Relative abundance of Bifidobacterium across partitions; (B) species-based Shannon index for the gut microbiome; (C) differential analysis of the gut microbiome across partitions. The top 30 most abundant species are depicted. Red indicates a higher species abundance in the first partition tested (significant when FDR < 0.05, trend when FDR < 0.1). Species and partitions are ranked according to hierarchical clustering based on Euclidean distance, with the exclusion of Bifidobacterium species from the graph.