fig2

Figure 2. MEGAnnotator2 execution time of each task and comparison with the old pipeline. Panel (A) shows the computational time of each step of the pipeline based on the performance observed through processing ten microbial genomes sequenced with short-read technologies (1,000,000 reads). Panel (B) exhibits the same data based on long reads input (500,000 reads), while panel (C) displays the computational time using a hybrid approach involving both short- and long-reads data. Panels (D) and (E) denote the computational time of annotation and assembly software, respectively. Panels (F) and (G) show the N50 and L50 of each assembly, respectively. Finally, panels (H) and (I) display the difference in time and space of different clustering of the RefSeq databases with CD-HIT.