fig5

Figure 5. (A) Unrooted AAI and (B) core genome phylogenetic trees. Clusters, families, and putative genera are reported. Dashed lines delineate clusters C1 (blue), C2 (green) and C3 (red). AAI tree was computed with UPGMA method from AAI distance matrix, while the core genome tree was constructed with the maximum likelihood method using RAxML tool from the core genes alignment.