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Drug target interaction prediction via gated attention and information bottleneck

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Complex Eng Syst 2026;6:[Accepted].
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Abstract

Accurate drug–target interaction (DTI) prediction is essential for drug repositioning and accelerating drug discovery. Deep learning methods have made remarkable progress over traditional biological experiments, yet existing models often fail to capture local node topologies and multi-view semantic dependencies simultaneously. Moreover, most methods rely on basic loss functions that cannot filter redundant noise, hindering compact and discriminative node representations. In this work, we propose the DTI prediction framework that integrates a hierarchical gated multi-head attention (HGMA) mechanism with an information bottleneck (IB) strategy. HGMA adopts a two-layer architecture: the first layer performs weighted aggregation over semantic meta-paths, and the second layer fuses attention heads via an adaptive gating mechanism, enhancing drug and target representations. The IB module compresses inputs by removing task-irrelevant redundancy while preserving predictive information, improving discriminability and generalization. Extensive experiments show that our model consistently outperforms state-of-the-art methods in both accuracy and robustness.

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Complex biological systems, drug–target interaction, hierarchical gated mechanism, graph attention, information bottleneck

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Song S, Chen Z, Wang Y, Guo Q, Guo Y. Drug target interaction prediction via gated attention and information bottleneck. Complex Eng Syst 2026;6:[Accept]. http://dx.doi.org/10.20517/ces.2025.88

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© The Author(s) 2026. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, sharing, adaptation, distribution and reproduction in any medium or format, for any purpose, even commercially, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
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Complex Engineering Systems
ISSN 2770-6249 (Online)

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